PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0859s0012.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 451aa    MW: 48949.8 Da    PI: 6.6475
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0859s0012.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.42e-30204262259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           Dg++WrKYGqK+ kg+++pr+YYrCt+a gC+v+k+v+r+aed +++++tYeg+Hnh+
  Kalax.0859s0012.2.p 204 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCTVRKQVQRCAEDRTILITTYEGNHNHP 262
                          7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-33188264IPR003657WRKY domain
SuperFamilySSF1182901.29E-27196264IPR003657WRKY domain
PROSITE profilePS5081129.643198264IPR003657WRKY domain
SMARTSM007746.8E-36203263IPR003657WRKY domain
PfamPF031063.6E-26205262IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080169Biological Processcellular response to boron-containing substance deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MVDDGSSPAT DDTRAKNEIV MLRAEIERVD RENQELKEML SHVTKSYSTM QVHLMTLMEE  60
SQKKDAHAQQ QLHVKHRQGD KQQIEVGTSR LVQKQLVVDL GLVPASDIHD QQSLSSSENN  120
EDGRSNSPPT NLEVASRLQM EEEAEITRRE ISMGMGREEE AVHVLPNKVP RFNPSKTNNA  180
DQAEATMRKA RVSVRARSEA TMITDGCQWR KYGQKMAKGN PCPRAYYRCT MAAGCTVRKQ  240
VQRCAEDRTI LITTYEGNHN HPLPPAAMAM ASTTSSAAHM LLSGSMSSTD GLMNPNFLAR  300
TLLPCSSNMA TISASAPFPT VTLDLTQDPN AATQSPPNTI QSQFQNPSQN LALLPQLFTQ  360
TLYNQSMFSG LQMSQHRDSS LGPKQQGPLA DSVTAAAIAA DPNFTAVIAA AISSMIGNSH  420
PINNITTNSS NSNGNNSGAN IVSSSGIPEN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-22194264877Probable WRKY transcription factor 4
2lex_A3e-22194264877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00209DAPTransfer from AT1G62300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002269696.21e-164PREDICTED: probable WRKY transcription factor 31
SwissprotQ9C5191e-120WRKY6_ARATH; WRKY transcription factor 6
TrEMBLF6HIC71e-164F6HIC7_VITVI; Putative uncharacterized protein
STRINGVIT_12s0059g00880.t011e-164(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-105WRKY family protein